Function reference • movenet

Loading and reformatting of data files

Functions for loading and initial processing of data files

load_config(): Load configurations from a config file into the movenet environment

reformat_data(): Read in livestock movement or holding data, and reshape to movenet format

asciify(): Convert character strings to unique, ASCII-compliant, and syntactically valid column names

Enhancing the privacy of movement or holding data

Functions for making data less identifiable

anonymise(): Anonymise data by replacing holding identifiers with prefix-integer combinations

jitter_dates(): Jitter (add noise to) movement dates

jitter_weights(): Jitter (add noise to) numeric movement data

round_dates(): Round down movement dates, and/or summarise data by time unit

round_weights(): Round numeric movement data

create_anonymisation_effect_analysis_report(): Create a report analysing the effects of modifying movement weights on network properties

Network analysis of movement data

Functions for generating network representations of movement data and performing network analyses

movedata2igraph(): Create a static network representation of movenet-format movement data

movedata2networkDynamic(): Create a dynamic network representation of movenet-format movement data

create_temporal_network_analysis_report(): Create a temporal network analysis report from a movement network

create_anonymisation_effect_analysis_report(): Create a report analysing the effects of modifying movement weights on network properties

parallel_summarise_temporal_node_properties(): Extract summary stats for temporal network node properties, in parallel

trace_contact_chains(): Trace ingoing and outgoing contact chains and visualise data on a Leaflet map

Configurations

Functions for setting and changing movenet configurations

load_config(): Load configurations from a config file into the movenet environment

validate_config(): Validate a movenet config file

get_config(): Get the values of configurations currently set in the movenet environment

change_config(): Change individual configurations in the movenet environment

save_config(): Save current configurations to a config file

new_config(): Copy a config file template to your working directory

Example data

Example data files and structures included in movenet

example_admin_areas: Example administrative area boundaries

example_movement_data.csv: Example movement data file (delimited text)

example_movement_data: Example movenet-format movement data

example_holding_data.csv: Example holding data file (delimited text)

example_holding_data: Example movenet-format holding data

local_spread_probabilities_ASF: ASF local spread transmission probabilities